The entire special issue is available at: here.
Table of Contents
- CHEMDNER: The drugs and chemical names extraction challenge Martin Krallinger, Florian Leitner, Obdulia Rabal, Miguel Vazquez, Julen Oyarzabal, Alfonso Valencia. Journal of Cheminformatics 2015, 7(Suppl 1):S1 (19 January 2015)[ PUBMED]
- The CHEMDNER corpus of chemicals and drugs and its annotation principles Martin Krallinger, Obdulia Rabal, Florian Leitner, Miguel Vazquez, David Salgado, Zhiyong Lu, Robert Leaman, Yanan Lu, Donghong Ji, Daniel M Lowe, Roger A Sayle, Riza Batista-Navarro, Rafal Rak, Torsten Huber, Tim Rocktäschel, Sérgio Matos, David Campos, Buzhou Tang, Hua Xu, Tsendsuren Munkhdalai, Keun Ryu, SV Ramanan, Senthil Nathan, Slavko Žitnik, Marko Bajec, Lutz Weber, Matthias Irmer, Saber A Akhondi, Jan A Kors, Shuo Xu, Xin An, Utpal Sikdar, Asif Ekbal, Masaharu Yoshioka, Thaer M Dieb, Miji Choi, Karin Verspoor, Madian Khabsa, C Giles, Hongfang Liu, Komandur Ravikumar, Andre Lamurias, Francisco M Couto, Hong-Jie Dai, Richard Tsai, Caglar Ata, Tolga Can, Anabel Usié, Rui Alves, Isabel Segura-Bedmar, Paloma Martínez, Julen Oyarzabal, Alfonso Valencia et al. Journal of Cheminformatics 2015, 7(Suppl 1):S2 (19 January 2015) [ PUBMED]
- tmChem: a high performance approach for chemical named entity recognition and normalization Robert Leaman, Chih-Hsuan Wei, Zhiyong Lu Journal of Cheminformatics 2015, 7(Suppl 1):S3 (19 January 2015) [ PUBMED]
- CHEMDNER system with mixed conditional random fields and multi-scale word clustering Yanan Lu, Donghong Ji, Xiaoyuan Yao, Xiaomei Wei, Xiaohui Liang Journal of Cheminformatics 2015, 7(Suppl 1):S4 (19 January 2015) [ PUBMED]
- LeadMine: a grammar and dictionary driven approach to entity recognition Daniel M Lowe, Roger A Sayle Journal of Cheminformatics 2015, 7(Suppl 1):S5 (19 January 2015) [ PUBMED]
- Optimising chemical named entity recognition with pre-processing analytics, knowledge-rich features and heuristics Riza Batista-Navarro, Rafal Rak, Sophia Ananiadou Journal of Cheminformatics 2015, 7(Suppl 1):S6 (19 January 2015) [ PUBMED]
- A document processing pipeline for annotating chemical entities in scientific documents David Campos, Sérgio Matos, José L Oliveira Journal of Cheminformatics 2015, 7(Suppl 1):S7 (19 January 2015) [ PUBMED]
- A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature Buzhou Tang, Yudong Feng, Xiaolong Wang, Yonghui Wu, Yaoyun Zhang, Min Jiang, Jingqi Wang, Hua Xu Journal of Cheminformatics 2015, 7(Suppl 1):S8 (19 January 2015) [ PUBMED]
- Incorporating domain knowledge in chemical and biomedical named entity recognition with word representations Tsendsuren Munkhdalai, Meijing Li, Khuyagbaatar Batsuren, Hyeon Park, Nak Choi, Keun Ryu Journal of Cheminformatics 2015, 7(Suppl 1):S9 (19 January 2015) [ PUBMED]
- Recognition of chemical entities: combining dictionary-based and grammar-based approaches Saber A Akhondi, Kristina M Hettne, Eelke van der Horst, Erik M van Mulligen, Jan A Kors Journal of Cheminformatics 2015, 7(Suppl 1):S10 (19 January 2015) [ PUBMED]
- A CRF-based system for recognizing chemical entity mentions (CEMs) in biomedical literature Shuo Xu, Xin An, Lijun Zhu, Yunliang Zhang, Haodong Zhang Journal of Cheminformatics 2015, 7(Suppl 1):S11 (19 January 2015) [ PUBMED]
- Chemical entity extraction using CRF and an ensemble of extractors Madian Khabsa, C Giles Journal of Cheminformatics 2015, 7(Suppl 1):S12 (19 January 2015) [ PUBMED]
- Improving chemical entity recognition through h-index based semantic similarity Andre Lamurias, João D Ferreira, Francisco M Couto Journal of Cheminformatics 2015, 7(Suppl 1):S13 (19 January 2015) [ PUBMED]
- Enhancing of chemical compound and drug name recognition using representative tag scheme and fine-grained tokenization Hong-Jie Dai, Po-Ting Lai, Yung-Chun Chang, Richard Tsai Journal of Cheminformatics 2015, 7(Suppl 1):S14 (19 January 2015) [ PUBMED]
- CheNER: a tool for the identification of chemical entities and their classes in biomedical literature Anabel Usié, Joaquim Cruz, Jorge Comas, Francesc Solsona, Rui Alves Journal of Cheminformatics 2015, 7(Suppl 1):S15 (19 January 2015) [ PUBMED]
