Co-located: BioCreative V.5 Challenge Evaluation Workshop and ELIXIR-EXCELERATE Workshop Text-mining infrastructure requirements
Table of Contents: BC V.5 - Workshop Proceedings
- The BioCreative V.5 evaluation workshop: tasks, organization, sessions and topics . Krallinger et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 8-10
- Evaluation of chemical and gene/protein entity recognition systems at BioCreative V.5: the CEMP and GPRO patents tracks. Pérez-Pérez et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 11-18
- Benchmarking biomedical text mining web servers at BioCreative V.5: the technical Interoperability and Performance of annotation Servers - TIPS track . Pérez-Pérez et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 19-27
- DUTIR at the BioCreative V.5.BeCalm Tasks: A BLSTM-CRF Approach for Biomedical Entity Recognition in Patents. Luo et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 28-39
- HITextracter System for Chemical and Gene/Protein Entity Mention Recognition in Patents. Liu et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 40-46
- CRFVoter: Chemical Entity Mention, Gene and Protein Related Object recognition using a conglomerate of CRF based tools. Liu et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 47-53
- Neji: Recognition of Chemical and Gene Mentions in Patent Texts. Santos and Matos. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 54-60
- Chemlistem - chemical named entity recognition using recurrent neural networks. Corbett and Boyle. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 61-68
- Recognition of Chemical Entity Mention in Patents Using Feature-rich CRF. Guo et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 69-72
- Towards Robust Chemical Recognition with TaggerOne at the BioCreative V.5 CEMP Task. Leaman and Lu. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 73-80
- A hybrid text mining system for chemical entity recognition and classification using dictionary look-up and pattern matching @ BeCalm challenge evaluation workshop. Raja et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 81-88
- IBEnt: Chemical Entity Mentions in Patents using ChEBI. Lamurias et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 89-95
- ChemGrab: Identification of Chemical Names Using a Combined Negative-Dictionary and Rule-Based Approach. Sharma and Sarkar. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 96-103
- Combining the BANNER tool with the DINTO ontology for the CEMP task of BioCreative V.5. Colon-Ruiz et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 104-107
- An Ensemble Algorithm for Sequential Labelling: A Case Study in Chemical Named Entity Recognition. Wang et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 108-114
- Statistical Principle-based Approach for Gene and Protein Related Object Recognition. Lai et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 115-121
- Tagger: BeCalm API for rapid named entity recognition. Jensen. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 122-129
- MER: a Minimal Named-Entity Recognition Tagger and Annotation Server. Couto et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 130-137
- SIA: Scalable Interoperable Annotation Server. Kirschnick and Thomas. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 138-145
- High-throughput, interoperability and benchmarking of text-mining with BeCalm biomedical metaserver. Madrid and Valencia. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 146-155
- Performance and interoperability assessment of Disease Extract Annotation Server (DEAS). Jonnagaddala et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 156-162
- TextImager as an interface to BeCalm. Hemati et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 163-166
- Olelo’s named-entity recognition web service in the BeCalm TIPS task. Folkerts and Neves. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 167-174
- OGER: OntoGene’s Entity Recogniser in the BeCalm TIPS Task. Furrer and Rinaldi. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 175-182
- READ-Biomed-Server: A Scalable Annotation Server Using the UIMA Concept Mapper. Teng and Verspoor. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 183-190
- Neji: DIY web services for biomedical concept recognition. Santos and Matos. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 191-195
- NTTMU-SCHEMA BeCalm API in BioCreative V.5. Dai et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 196-204
- Micro-RNA Recognition in Patents in BioCreative V.5. Wang et al. Proceedings of the BioCreative V.5 Challenge Evaluation Workshop, 205-209